SkylineTest: SkylineTest

In Vitek-Lab/MSstatsLiP: LiP Significance Analysis in shotgun mass spectrometry-based proteomic experiments

SkylineTest

Description

Example of input data from Skylinet.

Usage

SkylineTest

Format

A data.table consisting of 2115 rows and 13 columns. Raw data for use in testing and examples.

Details

Input to MSstatsLiP converter SkylinetoMSstatsLiPFormat Contains the following columns:

• Protein.Name : Name of Proteins identified by Skyline

• Peptide.Modified.Sequence : Peptide sequence

• Precursor.Charge : Charge of ion

• Fragment.Ion : Fragment ion

• Product.Charge : Identified Ion charge

• Isotope.Label.Type : Label Type

• Condition : Name of condition

• BioReplicate : name of bioreplicate annotated to data

• File.Name : Name of spectral processing run

• Area : Abudance area

• Standard.Type : Type name for row

• Truncated : Boolean if row was truncated

Examples

head(SkylineTest)

Vitek-Lab/MSstatsLiP documentation built on April 5, 2024, 3:25 a.m.