Vitek-Lab/SharedPeptidesExplorer: Weighted Protein-Level Summarization for Protein Clusters

Protein-level summarization of feature (PSM)-level data is an important step in proteomics data analysis methods, including the MSstats workflow. MSstats and MSstatsTMT packages summarize features based on unique peptides. This package implements a statistical method to jointly summarize clusters of proteins that share features using weights specific to peptide-protein matches.

Getting started

Package details

Bioconductor views MassSpectrometry Proteomics Software
Maintainer
LicenseGPL (>= 3)
Version0.99.7
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("Vitek-Lab/SharedPeptidesExplorer")
Vitek-Lab/SharedPeptidesExplorer documentation built on April 14, 2025, 1:45 p.m.