API for Vitek-Lab/SharedPeptidesExplorer
Weighted Protein-Level Summarization for Protein Clusters
| Global functions | |
|---|---|
| MSstatsWeightedSummary-class | Man page |
| addClusterMembership | Man page Source code |
| adjustProteinAssignments | Man page Source code |
| checkDataCorrectness | Man page Source code |
| convergenceHistory | Man page |
| convergenceHistory,MSstatsWeightedSummary-method | Man page |
| convergenceSummary | Man page |
| convergenceSummary,MSstatsWeightedSummary-method | Man page |
| createPeptideProteinGraph | Man page Source code |
| featureData | Man page |
| featureData,MSstatsWeightedSummary-method | Man page |
| featureWeights | Man page |
| featureWeights,MSstatsWeightedSummary-method | Man page |
| getAnnotation | Man page |
| getClusterStatistics | Man page Source code |
| getClusterSummaries | Man page Source code |
| getConvergenceHistory | Man page |
| getConvergenceSummary | Man page |
| getCurrentWeights | Man page |
| getDiscordantInfo | Man page Source code |
| getPeptideProteinWeights | Man page Source code |
| getProteinSummaryDesign | Man page |
| getProteinsClusters | Man page Source code |
| getProteinsOptimProblem | Man page |
| getWeightedProteinSummary | Man page Source code |
| getWeightedSummarySingleRun | Man page |
| getWeightsConstraints | Man page |
| getWeightsDesign | Man page |
| getWeightsHistory | Man page |
| getWeightsSummary | Man page |
| imputeTMT | Source code |
| makeMSstatsTMTInput | Man page |
| makeMSstatsTMTInput,MSstatsWeightedSummary-method | Man page |
| method | Source code |
| normalizePeptides | Man page Source code |
| normalizeSharedPeptides | Man page Source code |
| plotClusterStats | Man page Source code |
| plotDistributionComparison | Man page Source code |
| plotProfiles | Man page |
| plotSummary | Man page |
| plotSummary,MSstatsWeightedSummary-method | Man page |
| plotSummaryComparison | Man page Source code |
| processIsoforms | Source code |
| processProteinOptimSolution | Man page |
| processSummarizationOutput | Man page |
| proteinClusters | Man page |
| proteinClusters,MSstatsWeightedSummary-method | Man page |
| proteinData | Man page |
| proteinData,MSstatsWeightedSummary-method | Man page |
| summarizeProteinsClusterSingleRun | Man page Source code |
| weightsHistory | Man page |
| weightsHistory,MSstatsWeightedSummary-method | Man page |
