Files in Vitek-Lab/SharedPeptidesExplorer
Weighted Protein-Level Summarization for Protein Clusters

.Rbuildignore

.gitignore

DESCRIPTION

MSstatsWeightedSummary.Rproj

NAMESPACE

R/adjust_assignments.R R/cluster_statistics.R R/discordant_info.R R/process_isoforms.R R/robust_summary.R R/utils_checks.R R/utils_impute.R R/utils_normalize.R R/utils_output.R R/utils_plots.R R/utils_summary.R R/utils_weights.R README.md

_pkgdown.yml

data/simulated_dataset.rda

docs/404.html

docs/LICENSE.html

docs/articles/index.html

docs/articles/shared_workflow.html

docs/articles/shared_workflow_files/figure-html/unnamed-chunk-13-1.png

docs/articles/shared_workflow_files/figure-html/unnamed-chunk-5-1.png

docs/authors.html

docs/deps/bootstrap-5.3.1/bootstrap.bundle.min.js

docs/deps/bootstrap-5.3.1/bootstrap.bundle.min.js.map

docs/deps/bootstrap-5.3.1/bootstrap.min.css

docs/deps/data-deps.txt

docs/deps/jquery-3.6.0/jquery-3.6.0.js

docs/deps/jquery-3.6.0/jquery-3.6.0.min.js

docs/deps/jquery-3.6.0/jquery-3.6.0.min.map

docs/index.html

docs/link.svg

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/MSstatsWeightedSummary-class.html

docs/reference/addClusterMembership.html

docs/reference/adjustProteinAssignments.html

docs/reference/checkDataCorrectness.html

docs/reference/convergenceHistory-MSstatsWeightedSummary-method.html

docs/reference/convergenceHistory.html

docs/reference/convergenceSummary-MSstatsWeightedSummary-method.html

docs/reference/convergenceSummary.html

docs/reference/createPeptideProteinGraph.html

docs/reference/featureData-MSstatsWeightedSummary-method.html

docs/reference/featureData.html

docs/reference/featureWeights-MSstatsWeightedSummary-method.html

docs/reference/featureWeights.html

docs/reference/getAnnotation.html

docs/reference/getClusterStatistics.html

docs/reference/getClusterSummaries.html

docs/reference/getConvergenceHistory.html

docs/reference/getConvergenceSummary.html

docs/reference/getCurrentWeights.html

docs/reference/getDiscordantInfo.html

docs/reference/getPeptideProteinWeights.html

docs/reference/getProteinSummaryDesign.html

docs/reference/getProteinsClusters.html

docs/reference/getProteinsOptimProblem.html

docs/reference/getWeightedProteinSummary.html

docs/reference/getWeightedSummarySingleRun.html

docs/reference/getWeightsConstraints.html

docs/reference/getWeightsDesign.html

docs/reference/getWeightsHistory.html

docs/reference/getWeightsSummary.html

docs/reference/index.html

docs/reference/makeMSstatsTMTInput-MSstatsWeightedSummary-method.html

docs/reference/makeMSstatsTMTInput.html

docs/reference/normalizePeptides.html

docs/reference/normalizeSharedPeptides.html

docs/reference/plotClusterStats.html

docs/reference/plotDistributionComparison.html

docs/reference/plotProfiles.html

docs/reference/plotSummary-MSstatsWeightedSummary-method.html

docs/reference/plotSummary.html

docs/reference/plotSummaryComparison.html

docs/reference/processProteinOptimSolution.html

docs/reference/processSummarizationOutput.html

docs/reference/proteinClusters-MSstatsWeightedSummary-method.html

docs/reference/proteinClusters.html

docs/reference/proteinData-MSstatsWeightedSummary-method.html

docs/reference/proteinData.html

docs/reference/summarizeProteinsClusterSingleRun.html

docs/reference/weightsHistory-MSstatsWeightedSummary-method.html

docs/reference/weightsHistory.html

docs/search.json

docs/sitemap.xml

vignettes/.gitignore

vignettes/shared_workflow.Rmd

Vitek-Lab/SharedPeptidesExplorer documentation built on April 14, 2025, 1:45 p.m.

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Vitek-Lab/SharedPeptidesExplorer
Weighted Protein-Level Summarization for Protein Clusters

Files in Vitek-Lab/SharedPeptidesExplorer
Weighted Protein-Level Summarization for Protein Clusters

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Vitek-Lab/SharedPeptidesExplorer Weighted Protein-Level Summarization for Protein Clusters

Files in Vitek-Lab/SharedPeptidesExplorer Weighted Protein-Level Summarization for Protein Clusters

R Package Documentation

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We want your feedback!

Vitek-Lab/SharedPeptidesExplorer
Weighted Protein-Level Summarization for Protein Clusters

Files in Vitek-Lab/SharedPeptidesExplorer
Weighted Protein-Level Summarization for Protein Clusters