API for Vivianstats/AIDE
Annotation-based transcript reconstruction and quantification

Global functions
aide Man page Source code
calculate_H Source code
calculate_H_skipbias Source code
est_alp_forward Source code
est_alp_one Source code
estimate_startprob Source code
filter_Isomat_by_reads Source code
filter_Isomat_by_reads_nlarge Source code
forward_LRT Source code
forward_LRT_v2 Source code
get_Loglik Source code
get_Loglike Source code
get_bandwidth Source code
get_compat_mat Source code
get_fragment_length_dist Source code
get_onetx_starts_data Source code
get_reads Source code
get_reads_from_bam Source code
gtf_to_gene_models Source code
ifExonPairInTranscript Source code
impute_fragment_len Source code
main Source code
rdata_to_gtf Source code
stepwise_LRT Source code
stepwise_LRT_wrap Source code
stepwise_LRT_wrap_single Source code
Vivianstats/AIDE documentation built on May 13, 2018, 12:45 a.m.