API for Vivianstats/AIDE
Annotation-assisted transcript reconstruction and quantification
| Global functions | |
|---|---|
| aide | Man page Source code |
| calculate_H | Source code |
| calculate_H_skipbias | Source code |
| est_alp_forward | Source code |
| est_alp_one | Source code |
| estimate_startprob | Source code |
| filter_Isomat_by_reads | Source code |
| filter_Isomat_by_reads_nlarge | Source code |
| filter_Isomat_by_reads_strict | Source code |
| forward_LRT | Source code |
| forward_LRT_v2 | Source code |
| get_Loglik | Source code |
| get_Loglike | Source code |
| get_bandwidth | Source code |
| get_compat_mat | Source code |
| get_fragment_length_dist | Source code |
| get_onetx_starts_data | Source code |
| get_reads | Source code |
| get_reads_from_bam | Source code |
| gtf_to_gene_models | Source code |
| ifExonPairInTranscript | Source code |
| impute_fragment_len | Source code |
| main | Source code |
| main_one | Source code |
| rdata_to_gtf | Source code |
| stepwise_LRT | Source code |
| stepwise_LRT_wrap | Source code |
| stepwise_LRT_wrap_single | Source code |
