phitest: Appling the Phitest method to a count matrix
In Vivianstats/PhitestR: Analyzing the Heterogeneity of Single-Cell Populations
Description
Usage
Arguments
Value
Author(s)
Description
Phitest for analyzing the heterogeneity of single-cell populations
Usage
1
phitest(object, label, ncores = 1, min.cell = 10)
Arguments
object
A matrix of single-cell UMI counts (rows for genes and columns for cells).
label
A character or numeric vector of cluster labels. Length should be the same as
cell number and order should match the order in object.
ncores
Number of cores used for parallel computation.
min.cell
An integer specifying a threshold to filter genes. Genes expressed in
fewer than min.cell cells are filtered out.
Value
A list of two elements: pval contains the P values, and
par contains the estimated parameters.
Author(s)
Wei Vivian Li, vivian.li@rutgers.edu
Vivianstats/PhitestR documentation built on Jan. 22, 2022, 12:23 a.m.
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Description Usage Arguments Value Author(s)
Description
Phitest for analyzing the heterogeneity of single-cell populations
Usage
1 | phitest(object, label, ncores = 1, min.cell = 10)
|
Arguments
object |
A matrix of single-cell UMI counts (rows for genes and columns for cells). |
label |
A character or numeric vector of cluster labels. Length should be the same as
cell number and order should match the order in |
ncores |
Number of cores used for parallel computation. |
min.cell |
An integer specifying a threshold to filter genes. Genes expressed in
fewer than |
Value
A list of two elements: pval contains the P values, and
par contains the estimated parameters.
Author(s)
Wei Vivian Li, vivian.li@rutgers.edu
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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