sclink_cor: Calculate scLink's correlation matrix

In Vivianstats/scLink: Inferring functional gene co-expression networks from single cell gene expression data

Calculate scLink's correlation matrix

Description

Calculate scLink's correlation matrix

Usage

sclink_cor(expr, ncores, nthre = 20, dthre = 0.9)

Arguments

expr	A gene expression matrix with rows representing cells and columns representing genes. Gene names are given as column names. Can be the output of sclink_norm or user constructed gene expression matrices.
ncores	Number of cores if using parallel computation.
nthre	An integer specifying a threshold on the number of complete observations. Defaults to 20.
dthre	A number specifying the threshold on dropout probabilities. Defaults to 0.9.

Value

A correlation matrix for gene co-expression relationships.

Author(s)

Wei Vivian Li, [e-mail]

Vivianstats/scLink documentation built on Aug. 7, 2022, 9:55 p.m.