README.md

In VladoBaca/BNRewiringRobustness: Discrete Bifurcation Analysis and Rewiring Robustness of Asynchronous Boolean Networks

BNRewiringRobustness

R package for computing quantitative discrete bifurcation and rewiring robustness of Boolean networks.

For more information on usage of the package and the underlying theory, see the thesis on the subject: https://is.muni.cz/th/diu88/Thesis.pdf

Installation:

install.packages("remotes")
remotes::install_github("VladoBaca/BNRewiringRobustness")

Usage example:

library(BNRewiringRobustness)

bn <- load_BN(system.file("examples", "motifs","crm_or.bn", package = "BNRewiringRobustness"))
rg <- load_RG(system.file("examples", "rgs","general_2.rg", package = "BNRewiringRobustness"))

qdbf <- compute_discrete_bifurcation(bn, rg)
robustness <- compute_rewiring_robustness(qdbf)
print(bifurcation_plot(qdbf))

VladoBaca/BNRewiringRobustness documentation built on Jan. 25, 2022, 11:51 p.m.