keggFind: Search Data in KEGG Database

In VonWebEinstein/keggAPI: KEGG API

Description

Finds entries with matching query keywords or other query data in a given database

Usage

keggFind(keywords)

Arguments

keywords

string. Query keywords or other query data with given database.

Details

URL Form 1:

keywords = '<database>/<query>'

<database> = pathway | module | ko | genome | <org> | compound | glycan | reaction | rclass | enzyme | disease | drug | dgroup | environ | genes | ligand

<org> = KEGG organism code or T number

This form searches entry identifier and associated fields.

URL Form 2:

keywords = '<database>/<query>/<option>'

<database> = compound | drug

<option> = formula | exact_mass | mol_weight

In this form, the chemical formula search is a partial match irrespective of the order of atoms given. The exact mass (or molecular weight) is checked by rounding off to the same decimal place as the query data. A range of values may also be specified with the minus(-) sign.

See kegg api for more details.

Value

A dataframe.

Examples

# for keywords "shiga" and "toxin"
keggFind('genes/shiga+toxin')

# for keywords "shiga toxin"
keggFind('genes/"shiga toxin"')

# for chemical formula "C7H10O5"
keggFind('compound/C7H10O5/formula')

# for chemical formula containing "O5" and "C7"
keggFind('compound/O5C7/formula')

# for 174.045 =< exact mass < 174.055
# equal in the sense of rounding to proper precision
keggFind('compound/174.05/exact_mass')

# for 300 =< molecular weight =< 310
keggFind('compound/300-310/mol_weight')

VonWebEinstein/keggAPI documentation built on May 9, 2019, 10:02 p.m.