| allDNA | Deduce all DNA from DAG |
| covered_edge_reversal | Reverse covered edges |
| DAG_from_TO | Learn DAG from ordering |
| find_comp_sink | find sink component |
| find_comp_source | find source component |
| find_covered_edges | Find covered edges |
| hello | Hello, World! |
| is_compatible_ordering | check if ordering is compatible with DAG |
| is_valid_DNA | check if DNA set is compatible with DAG |
| is_valid_IO | check if layer is compatible with DAG |
| LearnDNAbackward | Learn DNA using early iterative CLIME |
| LearnDNAforward | Learn DNA using early stopped PC |
| LearnDNAforwardthreshold | Learn DNA using early stopped PC (special case: 2 levels,... |
| loglikGGM | Compute log likelihood for Gaussian Distr |
| next_graph | (internal) move to next graph |
| orderConstraining | Deduce order-constraining DNA from arbitrary DNA |
| PC_smallset | PC algorithm at level k |
| SP | Modifed Sparsest permutation (with DNA and pruning) |
| SparsestPermutation | Modifed Sparsest permutation (incorporating DNA and pruning) |
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