training_data: Training set
In WangX-Lab/PreMSIm: Prediction of microsatellite instability (MSI) based on gene expression profiles in cancer
training_data R Documentation
Training set
Description
The training set is the expression profiles of a 15-gene panel from TCGA RNA-Seq pan-cancer (involving colon, gastric, and endometrial cancers) dataset.
Usage
training_data
Format
A dataframe with 1383 rows (tumor samples) and 16 columns (MSI status of tumor samples, and 15 gene features). The column names
are as follows:
- MSI_status
MSI_status
- DDX27
DEAD-box helicase 27
- EPM2AIP1
EPM2A interacting protein 1
- HENMT1
HEN methyltransferase 1
- LYG1
lysozyme g1
- MLH1
mutL homolog 1
- MSH4
mutS homolog 4
- NHLRC1
NHL repeat containing E3 ubiquitin protein ligase 1
- NOL4L
nucleolar protein 4 like
- RNLS
renalase, FAD dependent amine oxidase
- RPL22L1
ribosomal protein L22 like 1
- RTF2
replication termination factor 2
- SHROOM4
shroom family member 4
- SMAP1
small ArfGAP 1
- TTC30A
tetratricopeptide repeat domain 30A
- ZSWIM3
zinc finger SWIM-type containing 3
Source
WangX-Lab/PreMSIm documentation built on Oct. 16, 2024, 1:40 a.m.
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| training_data | R Documentation |
Training set
Description
The training set is the expression profiles of a 15-gene panel from TCGA RNA-Seq pan-cancer (involving colon, gastric, and endometrial cancers) dataset.
Usage
training_data
Format
A dataframe with 1383 rows (tumor samples) and 16 columns (MSI status of tumor samples, and 15 gene features). The column names are as follows:
- MSI_status
MSI_status
- DDX27
DEAD-box helicase 27
- EPM2AIP1
EPM2A interacting protein 1
- HENMT1
HEN methyltransferase 1
- LYG1
lysozyme g1
- MLH1
mutL homolog 1
- MSH4
mutS homolog 4
- NHLRC1
NHL repeat containing E3 ubiquitin protein ligase 1
- NOL4L
nucleolar protein 4 like
- RNLS
renalase, FAD dependent amine oxidase
- RPL22L1
ribosomal protein L22 like 1
- RTF2
replication termination factor 2
- SHROOM4
shroom family member 4
- SMAP1
small ArfGAP 1
- TTC30A
tetratricopeptide repeat domain 30A
- ZSWIM3
zinc finger SWIM-type containing 3
Source
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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