calc.cdr: Calculate the cellular detection rate
In WarrenLab/single-cell: Helper Functions For Single-Cell Analysis
View source: R/differential_expression.R
calc.cdr R Documentation
Calculate the cellular detection rate
Description
Given a feature X cell table of raw counts, calculate the cellular detection
rate for each cell. The cellular detection rate of a cell is a number between
0 and 1 representing the fraction of the total number of features measured
that have a count > 0 in that cell. It is useful as a covariate in
differential expression analyses.
Usage
calc.cdr(counts)
Arguments
counts
A feature X cell table of raw counts.
Value
A vector of cellular detection rate per cell
Examples
cdr <- calc.cdr(seurat@assays$RNA@counts)
WarrenLab/single-cell documentation built on June 10, 2022, 1:50 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/differential_expression.R
| calc.cdr | R Documentation |
Calculate the cellular detection rate
Description
Given a feature X cell table of raw counts, calculate the cellular detection rate for each cell. The cellular detection rate of a cell is a number between 0 and 1 representing the fraction of the total number of features measured that have a count > 0 in that cell. It is useful as a covariate in differential expression analyses.
Usage
calc.cdr(counts)
Arguments
counts |
A feature X cell table of raw counts. |
Value
A vector of cellular detection rate per cell
Examples
cdr <- calc.cdr(seurat@assays$RNA@counts)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.