shorten: shorten
In WengLynn/shorten: Reduce the length of your sequences by removing the conserved sites.
Description
Reduce the length of your sequences by removing the conserved sites.
Usage
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shorten_site(filename,key_pattern,lev,cutlength = 0)
PARAMETERS:
key_pattern, the id of your refference sequence to label the location of every site.
lev, how many sites different to each other will be remain.
cutlength, the length of bp to be removed at the head and tail of your sequences
Examples
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shorten_site("filename.fasta","EPI_id",lev = 0,cutlength = 10)
WengLynn/shorten documentation built on Jan. 3, 2022, 12:13 a.m.
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Description
Reduce the length of your sequences by removing the conserved sites.
Usage
1 2 3 4 5 6 7 8 9 | shorten_site(filename,key_pattern,lev,cutlength = 0)
PARAMETERS:
key_pattern, the id of your refference sequence to label the location of every site.
lev, how many sites different to each other will be remain.
cutlength, the length of bp to be removed at the head and tail of your sequences
|
Examples
1 | shorten_site("filename.fasta","EPI_id",lev = 0,cutlength = 10)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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