Files in WerthPADOH/naaccr
Read Cancer Records in the NAACCR Format
.Rbuildignore
.gitattributes
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
NEWS
R/data-item-cleaning.R
R/data-item-interpreting.R
R/gis.R
R/naaccr_factor.R
R/naaccr_record.R
R/onLoad.R
R/read_naaccr.R
R/record_format.R
R/write_naaccr.R
README.Rmd
README.md
build.R
data-raw/code-labels/afpPostOrchiectomyRange.csv
data-raw/code-labels/ambiguousTerminologyDx.csv
data-raw/code-labels/anemia.csv
data-raw/code-labels/autopsy.csv
data-raw/code-labels/behavior.csv
data-raw/code-labels/bilirubinPretxUnitOfMeasure.csv
data-raw/code-labels/brafMutationalAnalysis.csv
data-raw/code-labels/brainMolecularMarkers.csv
data-raw/code-labels/brainPrimaryTumorLocation.csv
data-raw/code-labels/casefindingSource.csv
data-raw/code-labels/ceaPretreatmentInterpretation.csv
data-raw/code-labels/censusCodSys19708090.csv
data-raw/code-labels/censusIndCode19702000.csv
data-raw/code-labels/censusIndCode2010.csv
data-raw/code-labels/censusOccCode19702000.csv
data-raw/code-labels/censusOccCode2010.csv
data-raw/code-labels/censusOccIndSys7000.csv
data-raw/code-labels/censusTrPovertyIndictr.csv
data-raw/code-labels/census_tract_certainty.csv
data-raw/code-labels/chromosome16qLossHeterozygosity.csv
data-raw/code-labels/chromosome1qStatus.csv
data-raw/code-labels/chromosome3Status.csv
data-raw/code-labels/chromosome8qStatus.csv
data-raw/code-labels/classOfCase.csv
data-raw/code-labels/cocAccreditedFlag.csv
data-raw/code-labels/cocCodingSysCurrent.csv
data-raw/code-labels/cocCodingSysOriginal.csv
data-raw/code-labels/codingSystemForEod.csv
data-raw/code-labels/computedEthnicity.csv
data-raw/code-labels/computedEthnicitySource.csv
data-raw/code-labels/creatininePretxUnitOfMeasure.csv
data-raw/code-labels/derivedRaiStage.csv
data-raw/code-labels/derived_seer_combined_source.csv
data-raw/code-labels/derived_seer_stage.csv
data-raw/code-labels/derived_stage_flag.csv
data-raw/code-labels/diagnosticConfirmation.csv
data-raw/code-labels/draining_lymph_nodes.csv
data-raw/code-labels/esophagusAndEgjTumorEpicenter.csv
data-raw/code-labels/ewsr1Fli1Fusion.csv
data-raw/code-labels/extranodalExtensionPath.csv
data-raw/code-labels/extranodal_extension.csv
data-raw/code-labels/fibrosisScore.csv
data-raw/code-labels/figoStage.csv
data-raw/code-labels/followUpSource.csv
data-raw/code-labels/followUpSourceCentral.csv
data-raw/code-labels/foxo1GeneRearrangements.csv
data-raw/code-labels/geocodingQualityCode.csv
data-raw/code-labels/gisCoordinateQuality.csv
data-raw/code-labels/gleasonTertiaryPattern.csv
data-raw/code-labels/gleason_patterns.csv
data-raw/code-labels/grade.csv
data-raw/code-labels/gradePathSystem.csv
data-raw/code-labels/gradePathValue.csv
data-raw/code-labels/hcg_range.csv
data-raw/code-labels/her2IhcSummary.csv
data-raw/code-labels/her2IshSummary.csv
data-raw/code-labels/highRiskHistologicFeatures.csv
data-raw/code-labels/histologicSubtype.csv
data-raw/code-labels/icdO2ConversionFlag.csv
data-raw/code-labels/icdO3ConversionFlag.csv
data-raw/code-labels/icdRevisionComorbid.csv
data-raw/code-labels/icdRevisionNumber.csv
data-raw/code-labels/industrySource.csv
data-raw/code-labels/inpc.csv
data-raw/code-labels/inrgss.csv
data-raw/code-labels/invasionBeyondCapsule.csv
data-raw/code-labels/ipsilateralAdrenalGlandInvolve.csv
data-raw/code-labels/irssStageForEye2.csv
data-raw/code-labels/jak2.csv
data-raw/code-labels/kitGeneImmunohistochemistry.csv
data-raw/code-labels/kras.csv
data-raw/code-labels/laterality.csv
data-raw/code-labels/ldhPretreatmentLevel.csv
data-raw/code-labels/ldh_range.csv
data-raw/code-labels/lnDistantMediastinalScalene.csv
data-raw/code-labels/lnHeadAndNeckLevels1To3.csv
data-raw/code-labels/lnHeadAndNeckLevels4To5.csv
data-raw/code-labels/lnHeadAndNeckLevels6To7.csv
data-raw/code-labels/lnHeadAndNeckOther.csv
data-raw/code-labels/lnLaterality.csv
data-raw/code-labels/lnStatusFemorInguinParaaortPelv.csv
data-raw/code-labels/ln_assessment_method.csv
data-raw/code-labels/lymphocytosis.csv
data-raw/code-labels/macroscopicEvalOfTheMesorectum.csv
data-raw/code-labels/majorVeinInvolvement.csv
data-raw/code-labels/maritalStatusAtDx.csv
data-raw/code-labels/methylationOfO6MGMT.csv
data-raw/code-labels/microsatelliteInstability.csv
data-raw/code-labels/militaryRecordNoSuffix.csv
data-raw/code-labels/morphology_coding_system.csv
data-raw/code-labels/multTumRptAsOnePrim.csv
data-raw/code-labels/multigeneSignatureMethod.csv
data-raw/code-labels/nMycAmplification.csv
data-raw/code-labels/naaccrRecordVersion.csv
data-raw/code-labels/neoadjuvTherapyClinicalResponse.csv
data-raw/code-labels/neoadjuvantTherapy.csv
data-raw/code-labels/nextFollowUpSource.csv
data-raw/code-labels/noPatientContactFlag.csv
data-raw/code-labels/occupationSource.csv
data-raw/code-labels/oncotypeDxRiskLevelDcis.csv
data-raw/code-labels/oncotypeDxRiskLevelInvasive.csv
data-raw/code-labels/overRideAgeSiteMorph.csv
data-raw/code-labels/overRideCs20.csv
data-raw/code-labels/overRideHistology.csv
data-raw/code-labels/path_report_type.csv
data-raw/code-labels/pediatricStage.csv
data-raw/code-labels/pediatricStagedBy.csv
data-raw/code-labels/pediatricStagingSystem.csv
data-raw/code-labels/peripheralBloodInvolvement.csv
data-raw/code-labels/peritonealCytology.csv
data-raw/code-labels/place.csv
data-raw/code-labels/pleuralEffusion.csv
data-raw/code-labels/pretextClinicalStaging.csv
data-raw/code-labels/pretreatment_interpretation.csv
data-raw/code-labels/primaryPayerAtDx.csv
data-raw/code-labels/profoundImmuneSuppression.csv
data-raw/code-labels/prostatePathologicalExtension.csv
data-raw/code-labels/ptld.csv
data-raw/code-labels/qualityOfSurvival.csv
data-raw/code-labels/race.csv
data-raw/code-labels/race_coding_system.csv
data-raw/code-labels/radBoostRxModality.csv
data-raw/code-labels/radLocationOfRx.csv
data-raw/code-labels/radRegionalRxModality.csv
data-raw/code-labels/radTreatmentVolume.csv
data-raw/code-labels/radiationTxDiscontinuedEarly.csv
data-raw/code-labels/radiation_external_beam_planning_tech.csv
data-raw/code-labels/radiation_modality.csv
data-raw/code-labels/radiation_primary_volume.csv
data-raw/code-labels/readmSameHosp30Days.csv
data-raw/code-labels/reasonForNoRadiation.csv
data-raw/code-labels/reasonForNoSurgery.csv
data-raw/code-labels/recordType.csv
data-raw/code-labels/recurrenceType1st.csv
data-raw/code-labels/registryType.csv
data-raw/code-labels/reportingFacilityRestrictionFlag.csv
data-raw/code-labels/residualTumVolPostCytoreduction.csv
data-raw/code-labels/responseToNeoadjuvantTherapy.csv
data-raw/code-labels/roads_rx_brm.csv
data-raw/code-labels/rqrsNcdbSubmissionFlag.csv
data-raw/code-labels/ruca.csv
data-raw/code-labels/rural_urban_continuum.csv
data-raw/code-labels/rxCodingSystemCurrent.csv
data-raw/code-labels/rxHospDxStgProc.csv
data-raw/code-labels/rxHospRadiation.csv
data-raw/code-labels/rxHospSurgApp2010.csv
data-raw/code-labels/rxReconBreast.csv
data-raw/code-labels/rxSummDxStgProc.csv
data-raw/code-labels/rxSummRadToCns.csv
data-raw/code-labels/rxSummRadiation.csv
data-raw/code-labels/rxSummSurgRadSeq.csv
data-raw/code-labels/rxSummSurgicalMargins.csv
data-raw/code-labels/rxSummSystemicSurSeq.csv
data-raw/code-labels/rxSummTransplntEndocr.csv
data-raw/code-labels/rxSummTreatmentStatus.csv
data-raw/code-labels/rx_summary_brm.csv
data-raw/code-labels/rx_summary_chemo.csv
data-raw/code-labels/rx_summary_hormone.csv
data-raw/code-labels/rx_summary_lymph_surgery.csv
data-raw/code-labels/rx_summary_other.csv
data-raw/code-labels/rx_summary_other_regional_distant.csv
data-raw/code-labels/rx_summary_palliative.csv
data-raw/code-labels/s_category.csv
data-raw/code-labels/seerTypeOfFollowUp.csv
data-raw/code-labels/seer_coding_system.csv
data-raw/code-labels/seer_summary_stage.csv
data-raw/code-labels/seer_summary_stage_2018.csv
data-raw/code-labels/separateTumorNodules.csv
data-raw/code-labels/serumAlbuminPretreatmentLevel.csv
data-raw/code-labels/serumBeta2MicroglobulinPretxLvl.csv
data-raw/code-labels/sex.csv
data-raw/code-labels/site_coding_system.csv
data-raw/code-labels/spanishHispanicOrigin.csv
data-raw/code-labels/state.csv
data-raw/code-labels/summaryGrade2018.csv
data-raw/code-labels/survival_flag.csv
data-raw/code-labels/test_results_2022.csv
data-raw/code-labels/thrombocytopenia.csv
data-raw/code-labels/tnmEditionNumber.csv
data-raw/code-labels/tnm_staged_by.csv
data-raw/code-labels/tobaccoUseSmokingStatus.csv
data-raw/code-labels/tumorGrowthPattern.csv
data-raw/code-labels/tumor_marker.csv
data-raw/code-labels/typeOfReportingSource.csv
data-raw/code-labels/uihoFacility.csv
data-raw/code-labels/uric.csv
data-raw/code-labels/visceralParietalPleuralInvasion.csv
data-raw/create-field_codes.R
data-raw/create-naaccr_format.R
data-raw/custom-country-codes.csv
data-raw/field_code_scheme.csv
data-raw/field_info.csv
data-raw/field_sentinel_scheme.csv
data-raw/record-formats/naaccr-dictionary-140.xml
data-raw/record-formats/naaccr-dictionary-150.xml
data-raw/record-formats/naaccr-dictionary-160.xml
data-raw/record-formats/naaccr-dictionary-180.xml
data-raw/record-formats/naaccr-dictionary-210.xml
data-raw/record-formats/naaccr-dictionary-220.xml
data-raw/record-formats/naaccr-dictionary-230.xml
data-raw/record-formats/naaccr-dictionary-240.xml
data-raw/record-formats/naaccr-dictionary-250.xml
data-raw/record-formats/retired-fields.csv
data-raw/record-formats/version-12.csv
data-raw/record-formats/version-13.csv
data-raw/record-formats/version-14.csv
data-raw/record-formats/version-15.csv
data-raw/record-formats/version-16.csv
data-raw/record-formats/version-18.csv
data-raw/record-formats/version-21.csv
data-raw/record-formats/xml-1.4-name-truncations.csv
data-raw/sentinel-labels/adenoidCysticBasaloidPattern.csv
data-raw/sentinel-labels/afpPretreatmentLabValue.csv
data-raw/sentinel-labels/afp_lab_value.csv
data-raw/sentinel-labels/bilirubinPretxTotalLabValue.csv
data-raw/sentinel-labels/breslowTumorThickness.csv
data-raw/sentinel-labels/ceaPretreatmentLabValue.csv
data-raw/sentinel-labels/circumferentialResectionMargin.csv
data-raw/sentinel-labels/creatininePretreatmentLabValue.csv
data-raw/sentinel-labels/dose_per_fraction.csv
data-raw/sentinel-labels/estrogenReceptorTotalAllredScore.csv
data-raw/sentinel-labels/extranodalExtensionHeadNeckPath.csv
data-raw/sentinel-labels/gestationalTrophoblasticPxIndex.csv
data-raw/sentinel-labels/gleason_score.csv
data-raw/sentinel-labels/hcg_lab_value.csv
data-raw/sentinel-labels/her2IshDualProbeRatio.csv
data-raw/sentinel-labels/her2_copy_number.csv
data-raw/sentinel-labels/iNRProthrombinTime.csv
data-raw/sentinel-labels/ki67.csv
data-raw/sentinel-labels/ldhPretreatmentLabValue.csv
data-raw/sentinel-labels/ldhUpperLimitsOfNormal.csv
data-raw/sentinel-labels/lnPositiveAxillaryLevel1To2.csv
data-raw/sentinel-labels/lnSize.csv
data-raw/sentinel-labels/measuredBasalDiameter.csv
data-raw/sentinel-labels/measuredThickness.csv
data-raw/sentinel-labels/microvascularDensity.csv
data-raw/sentinel-labels/mitoticCountUvealMelanoma.csv
data-raw/sentinel-labels/mitoticRateMelanoma.csv
data-raw/sentinel-labels/multigeneSignatureResults.csv
data-raw/sentinel-labels/multiplicityCounter.csv
data-raw/sentinel-labels/nccnInternationalPrognosticIndex.csv
data-raw/sentinel-labels/nodes_positive.csv
data-raw/sentinel-labels/number_of_cores.csv
data-raw/sentinel-labels/number_of_examined_nodes.csv
data-raw/sentinel-labels/number_of_fractions.csv
data-raw/sentinel-labels/number_of_positive_nodes.csv
data-raw/sentinel-labels/oncotypeDxRecurrenceScoreDcis.csv
data-raw/sentinel-labels/oncotypeDxRecurrenceScoreInvasiv.csv
data-raw/sentinel-labels/pdl1.csv
data-raw/sentinel-labels/percentNecrosisPostNeoadjuvant.csv
data-raw/sentinel-labels/progesteroneRecepTotalAllredScor.csv
data-raw/sentinel-labels/psaLabValue.csv
data-raw/sentinel-labels/radRegionalDoseCgy.csv
data-raw/sentinel-labels/receptor_percent_positive.csv
data-raw/sentinel-labels/regional_nodes_removed.csv
data-raw/sentinel-labels/sarcomatoidFeatures.csv
data-raw/sentinel-labels/sentinelLymphNodesExamined.csv
data-raw/sentinel-labels/sequenceNumberCentral.csv
data-raw/sentinel-labels/sequenceNumberHospital.csv
data-raw/sentinel-labels/survival_months.csv
data-raw/sentinel-labels/total_dose.csv
data-raw/sentinel-labels/tumorDeposits.csv
data-raw/sentinel-labels/tumor_size.csv
data-raw/sentinel-labels/whiteBloodCellCount.csv
external/census-codes/2010-occ-codes-with-crosswalk-from-2002-2011.xls
external/census-codes/PHVS_Industry_CDC_Census2010.txt
external/census-codes/PHVS_Occupation_CDC_Census2010_V1.txt
external/census-codes/create-1970-2000-industry-codes.R
external/census-codes/create-1970-2000-occupation-codes.R
external/census-codes/create-2010-industry-occupation-codes.R
external/census-codes/industry-crosswalk-90-00-02-07-12.xls
external/census-codes/occ2000t.pdf
external/create-record-format-files.R
inst/COPYRIGHTS
inst/extdata/synthetic-naaccr-18-abstract.txt
naaccr.Rproj
tests/data/synthetic-naaccr-16-abstract.txt
tests/data/synthetic-naaccr-16-incidence.txt
tests/data/synthetic-naaccr-18-abstract.txt
tests/data/synthetic-naaccr-18-incidence.txt
tests/data/synthetic-naaccr-18-incidence.xml
tests/testthat.R
tests/testthat/test-gis.R
tests/testthat/test-item-interpreting.R
tests/testthat/test-naaccr_factor.R
tests/testthat/test-naaccr_record.R
tests/testthat/test-read-xml.R
tests/testthat/test-utilities.R
tests/testthat/test-write_naaccr.R
