README.md

In WetRobot/iarccrgtools: IARC CRG Tools Utilities

Package iarccrgtools

Utilities for using IARC CRG Tools on Windows via R.

Recommended installation

devtools::install_github(
  "FinnishCancerRegistry/iarccrgtools",
  ref = readline("enter latest tag on github: ")
)

Example

dir_path <- tempdir()
iarccrgtools::iarc_workdir_set(dir_path)

tool_name <- "check"
subset <- "mandatory"
iarc_df <- iarccrgtools::tool_colnameset_example_dataset(
  paste0(subset, "_", tool_name), n.rows = 10L
)
results <- iarccrgtools::interact_with_tool(
  iarc_df, tool.name = tool_name, clean = TRUE
)

result_df <- iarccrgtools::connect_tool_results_to_observations(
  record.ids = iarc_df[["record_id"]], tool.results = results
)

WetRobot/iarccrgtools documentation built on Feb. 1, 2024, 6:33 a.m.