GeneratePWAlignDict: Generate pairwise alignment dictionary between reference...
In WubingZhang/PhageR: Functions for phage display data analysis
Description
Usage
Arguments
Value
Author(s)
Description
Generate pairwise alignment dictionary between reference genome and peptides
Usage
1
GeneratePWAlignDict(peptides, refseq_fa, rdsfile = NULL, core = 2)
Arguments
peptides
A vector of sequences.
refseq_fa
A fasta file in which sequences are applied to blast.
rdsfile
The path to rds file.
core
The number of core used to run pairwised sequence alignment.
Value
A data frame with blast results, (peptide, refseq, score, start, end, width).
Author(s)
Wubing Zhang
WubingZhang/PhageR documentation built on July 2, 2019, 9:03 p.m.
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Description Usage Arguments Value Author(s)
Description
Generate pairwise alignment dictionary between reference genome and peptides
Usage
1 | GeneratePWAlignDict(peptides, refseq_fa, rdsfile = NULL, core = 2)
|
Arguments
peptides |
A vector of sequences. |
refseq_fa |
A fasta file in which sequences are applied to blast. |
rdsfile |
The path to rds file. |
core |
The number of core used to run pairwised sequence alignment. |
Value
A data frame with blast results, (peptide, refseq, score, start, end, width).
Author(s)
Wubing Zhang
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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