SignatureAnalyzerPrepHyper4: Prepare the "hypermutated" segment (a.k.a "Secondary" segment...
In WuyangFF95/SynSigRun: Run Mutational Signature Analysis Software Packages Using Mutational Spectra generated by SynSigGen
View source: R/SignatureAnalyzerHyperRun.R
SignatureAnalyzerPrepHyper4 R Documentation
Prepare the "hypermutated" segment (a.k.a "Secondary" segment
of a split non-hyper and hyper data set.)
Description
Prepare the "hypermutated" segment (a.k.a "Secondary" segment
of a split non-hyper and hyper data set.)
Usage
SignatureAnalyzerPrepHyper4(parent.dir, overwrite = FALSE)
Arguments
parent.dir
A directory that must contain subdirectories
syn.SA.hyper.low and syn.SA.hyper.mixed.
syn.SA.hyper.low must contain the synthetic
non-hypermutated data and the results of running SignatureAnalyzer on the non-hyper
segment, with subdirectories sa.sa.96, sa.sa.COMPOSITE,
sp.sa.COMPOSITE, and sp.sp.
syn.SA.hyper.mixed must contain the synthetic hypermutated data. The results of
the initial SignatureAnalyzer run will be placed here to prepare this directory
for the second SignatureAnalyzer run.
overwrite
If TRUE overwrite existing directories and files.
WuyangFF95/SynSigRun documentation built on Oct. 7, 2022, 1:16 p.m.
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View source: R/SignatureAnalyzerHyperRun.R
| SignatureAnalyzerPrepHyper4 | R Documentation |
Prepare the "hypermutated" segment (a.k.a "Secondary" segment of a split non-hyper and hyper data set.)
Description
Prepare the "hypermutated" segment (a.k.a "Secondary" segment of a split non-hyper and hyper data set.)
Usage
SignatureAnalyzerPrepHyper4(parent.dir, overwrite = FALSE)
Arguments
parent.dir |
A directory that must contain subdirectories
|
overwrite |
If |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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