CP_ScatterPlot: Title Scatter Plots of Expression vs. Time.

In XiangningXue/CircadianPipeline: What the Package Does (One Line, Title Case)

Title Scatter Plots of Expression vs. Time.

Description

Title Scatter Plots of Expression vs. Time.

Usage

CP_ScatterPlot(
  x,
  genes.plot = NULL,
  Info1 = "gI",
  Info2 = "gII",
  filename = NULL,
  file.width = 8,
  file.height = 8
)

Arguments

x	CP_Rhythmicity() output
genes.plot	a vector of character strings. Names of genes to be plotted. Names should be same in nomenclature as gname in the data list. If NULL, the top 10 most rhythmic genes from group I will be used
Info1	character string. Used in the plot title for group I.
Info2	character string. Used in the plot title for group II (if exist).
filename	character string of the filename for exporting. If NULL, plots are not saved.
file.width	height of the export plot
file.height	width of the export plot

Value

A list of ggplot2 plots.

Examples

x = CP_sim_data(ngene=1000, nsample=30, A1=c(1, 3), A2=c(1, 3),
phase1=c(0, pi/4), phase2=c(pi/4, pi/2),
M1=c(4, 6), M2=c(4, 6), sigma1=1, sigma2=1)

rhythm.res = CP_Rhythmicity(x1 = x[[1]], x2 = x[[2]])
rhythm.plots = CP_ScatterPlot(rhythm.res)
#to display plot in Rstudio use CP_PlotDisplay()
#display the first five plots
CP_PlotDisplay(rhythm.plots, id = 1:5)

XiangningXue/CircadianPipeline documentation built on May 3, 2022, 3:04 p.m.