This function extracts and plots connections of a specific cell type with other cell types. For a certain cell type, ligand to receptor is defined as OUT signal and receptor to ligand is defined as IN signal. By setting parameters, users can chose the type of signals to view. The ligand-receptor pairs are ranked by their mean expression value.
1 2 3 4 |
LRC3_list |
the input data generated by function LRC3_INF. |
CellType_Index |
the Index of the queried cell type that users are interested. The maximum number is the number of cell types. |
By_Proportion |
if |
Combine_InOut |
If |
TargetCellType_IN |
if |
TargetCellType_OUT |
if |
ViewTop_LRpairs |
if |
TOP_Number |
the number of ligand-receptor pairs to show if |
SaveImage |
if |
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