LUSCmeth: LUSC DNA methylation dataset

In YC3/SEPIRA: Systems EPigenomics Inference of Regulatory Activity

Description

LUSCmeth is a subset of TCGA LUSC DNA methylation dataset. It contains 316 genes and 370 samples with 41 normal sample and 275 cancer samples.

Usage

data("LUSCmeth")

Format

The format is: num [1:333, 1:316] 0.154246 0.197384 0.000585 -0.033967 -0.000737 ... - attr(*, "dimnames")=List of 2 ..$ : chr [1:333] "100130417" "100287284" "10105" "1016" ... ..$ : chr [1:316] "TCGA-43-3394-11A" "TCGA-18-3417-11A" "TCGA-18-4721-11A" "TCGA-22-4599-11A" ...

Source

https://cancergenome.nih.gov/

Examples

data(LUSCmeth)

YC3/SEPIRA documentation built on Feb. 10, 2022, 4:14 p.m.