Description Usage Arguments Value Examples
dis1
: computes the contribution of each species/node to the two types of dissimilarity measures.
1 |
x |
the species-by-assemblages abundance matrix or data.frame with species names as rownames and the colnames as assemblage/site names. |
q |
a single value for the diversity order. |
type |
a string: "tax" (taxonomic) or "phy" (phylogenetic). |
type2 |
a string: "species" or "k"."species" means the contribution of each species/node to the two types of dissimilarity measures (Jaccard-type dissimilarity and Sorensen-type dissimilarity). "k" means the contribution of each assemblage/location/site to the two types of dissimilarity measures (Jaccard-type dissimilarity and Sorensen-type dissimilarity). In the worked example, the contribution of each assemblage/stage is not computed. |
tree |
the pylo object of the phylogenetic tree of all assemblages. Needed only if |
a data frame tabulating the contribution of each species/node to the two types of dissimilarity measures: Jaccard-type (1-U_qN) and Sorensen-type (1-C_qN)
1 2 3 4 5 6 7 |
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