Man pages for YasinEl/mzRAPP
Benchmark Dataset Generation and Non-Targeted Data Pre-Processing Assessment
| Alignment_error_plot | Alignment_error_plot |
| assemble_peaks | assemble_peaks |
| assess_alignment | assess_alignment |
| as.sunburstDF | as.sunburstDF |
| best_feature_per_comparison | best_feature_per_comparison |
| callmzRAPP | callmzRAPP |
| check_benchmark_input | check_benchmark_input |
| check_IR_biases | check_IR_biases |
| check_missing_peaks | check_missing_peaks |
| check_nonTargeted_input | check_nonTargeted_input |
| classify_false_negative | classify_false_negative |
| clean_peak_assignments | clean_peak_assignments |
| compare_peaks | compare_peaks |
| count_alignment_errors | count_alignment_errors |
| count_errors_max | count_errors_max |
| cutout_peaks | cutout_peaks |
| derive_performance_metrics | derive_performance_metrics |
| detect_double_peaks2 | detect_double_peaks2 |
| feature_compare | feature_compare |
| File_con_test | File_con_test |
| find_bench_peaks | find_bench_peaks |
| find_best_feature_feature | find_best_feature_feature |
| find_r_s_error | find_r_s_error |
| generate_options | generate_options |
| get_avg_noise | get_avg_noise |
| get_EIMatches_BM_NPPpeaks | get_EIMatches_BM_NPPpeaks |
| GetFWXM | GetFWXM |
| get_main_UT_groups | get_main_UT_groups |
| Get_MZ_list | Get_MZ_list |
| get_mz_table | get_mz_table |
| Get_peak_vars | Get_peak_vars |
| get_pot_peak_ranges2 | get_pot_peak_ranges2 |
| get_ROIs | get_ROIs |
| GetSharpness | GetSharpness |
| getXIC | getXIC |
| GetZigzagIDX | GetZigzagIDX |
| import_grouped_elmaven | import_grouped_elmaven |
| import_grouped_Metaboanalyst | import_grouped_Metaboanalyst |
| import_grouped_msdial | import_grouped_msdial |
| import_grouped_mzmine | import_grouped_mzmine |
| import_grouped_openms | import_grouped_openms |
| import_grouped_slaw | import_grouped_slaw |
| import_grouped_xcms | import_grouped_xcms |
| import_options | import_options |
| import_ungrouped_cd | import_ungrouped_cd |
| import_ungrouped_elmaven | import_ungrouped_elmaven |
| import_ungrouped_Metaboanalyst | import_ungrouped_Metaboanalyst |
| import_ungrouped_msdial | import_ungrouped_msdial |
| import_ungrouped_mzmine | import_ungrouped_mzmine |
| import_ungrouped_openms | import_ungrouped_openms |
| import_ungrouped_slaw | import_ungrouped_slaw |
| import_ungrouped_xcms | import_ungrouped_xcms |
| Limit_Target_list | Limit_Target_list |
| match_features_to_benchmark | match_features_to_benchmark |
| match_NPPpeaks_to_NPPfeatures | match_NPPpeaks_to_NPPfeatures |
| match_peaks_to_benchmark | match_peaks_to_benchmark |
| match_peaks_to_benchmark_split | match_peaks_to_benchmark_split |
| metrics_per_molecule | metrics_per_molecule |
| pick_main_feature | pick_main_feature |
| pick_main_feature_sd | pick_main_feature_sd |
| pick_main_peak | pick_main_peak |
| pick_main_peak_sd | pick_main_peak_sd |
| plot_bench_histo | plot_bench_histo |
| plot_bench_overview | plot_bench_overview |
| plot_bench_peak_overview | plot_bench_peak_overview |
| plot_comp_dist_of_found_peaks | plot_comp_dist_of_found_peaks |
| plot_comp_iso_pred_error | plot_comp_iso_pred_error |
| plot_comp_missing_value_hm | plot_comp_missing_value_hm |
| plot_comp_peak_overview | plot_comp_peak_overview |
| plot_comp_scatter_plot | plot_comp_scatter_plot |
| plot_IR_peaks | plot_IR_peaks |
| plotly_click_wo_warnings | plotly_click_wo_warnings |
| plot_Peak | plot_Peak |
| plot_Peak_per_mol | plot_Peak_per_mol |
| plot_Peak_with_predicted_peak | plot_Peak_with_predicted_peak |
| plot_sunburst_alignment | plot_sunburst_alignment |
| plot_sunburst_peakQuality | plot_sunburst_peakQuality |
| plot_sunburst_peaks | plot_sunburst_peaks |
| predict_Iso | predict_Iso |
| reIndexFeatures | reIndexFeatures |
| remove_identical_peaks | remove_identical_peaks |
| rename_columns_from_options | rename_columns_from_options |
| round_woe | round_woe |
| SkylinePeakBoundaries | SkylinePeakBoundaries |
| SkylineTransitionList | SkylineTransitionList |
| top_to_x | top_to_x |
