estimateBeta: Estimates the beta threshold for DEBRADataSet

In YevhenAkimov/DEBRA_1.01:

Estimates the beta threshold for DEBRADataSet

Description

Estimates the beta threshold for DEBRADataSet

Usage

estimateBeta(drb, s = 500, obs_window = 30, max_window = 150,
  KS_test_window = 30, default_beta = 10)

Arguments

drb	DEBRADataSet object
s	an integer specifying number of replicates for local Kolmogorov-Smirnov statistic estimation. Default is 1000
obs_window	an integer specifying number of observations sampled from ordered mean counts values. Mean counts are calculated from condition samples
max_window	a numeric specifying maximum size of the sampling window in read counts max(sampled_counts)-min(sampled_counts) < max_window
KS_test_window	an integer specifying number of observations sampled from theoretical and empirical Kolmogorov-Smirnov statistics
default_beta	a numeric specifying beta value used if the estimation has failed

Examples

drb<-estimateBeta(drb)

YevhenAkimov/DEBRA_1.01 documentation built on April 4, 2022, 6:19 a.m.