scDaPars: Use scDaPars to quantify APA dynamics across single cells...
In YiPeng-Gao/scDaPars: Dynamic Analysis of Alternative Polyadenylation from Single-Cell RNA-Seq
Description
Usage
Arguments
Value
Author(s)
Description
Use scDaPars to quantify APA dynamics across single cells using scRNA-seq data
Usage
1
scDaPars(raw_PDUI_file, out_dir, filter_gene_thre, filter_cell_thre)
Arguments
raw_PDUI_file
A character specifying the full path of the raw PDUI matrix generated by step1 of scDaPars;
out_dir
A character specifying the full path of the output directory;
filter_gene_thr
A number between 0 and 1;
specifying the percent of cells a gene's PDUI must be detected;
filter_cell_thr
A number between 0;
specigying the percent of genes' PDUI a cell must be detected;
Value
scDaPars returns the imputed PDUI_matrix with rows representing genes and columns representing cells;
It saves the imputed PDUI matrix as scDaPars_imputed_results.txt;
Author(s)
Yipeng Gao, yipeng.gao@bcm.edu
Wei Li, wei.li@uci.edu
YiPeng-Gao/scDaPars documentation built on May 29, 2021, 3:18 a.m.
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Description Usage Arguments Value Author(s)
Description
Use scDaPars to quantify APA dynamics across single cells using scRNA-seq data
Usage
1 | scDaPars(raw_PDUI_file, out_dir, filter_gene_thre, filter_cell_thre)
|
Arguments
raw_PDUI_file |
A character specifying the full path of the raw PDUI matrix generated by step1 of scDaPars; |
out_dir |
A character specifying the full path of the output directory; |
filter_gene_thr |
A number between 0 and 1; specifying the percent of cells a gene's PDUI must be detected; |
filter_cell_thr |
A number between 0; specigying the percent of genes' PDUI a cell must be detected; |
Value
scDaPars returns the imputed PDUI_matrix with rows representing genes and columns representing cells; It saves the imputed PDUI matrix as scDaPars_imputed_results.txt;
Author(s)
Yipeng Gao, yipeng.gao@bcm.edu
Wei Li, wei.li@uci.edu
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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