nortimecoursenoall: Time-course Metabolomic Study with dataset without QCSs and...
In YingZhang0811/test11: R Package for Assessing Normalization for Metabolomic Data
Description
Usage
Arguments
Examples
View source: R/Timecourse-NONE.R
Description
This function handles (1) normalizing the Time-course metabolomic
data without QCSs and ISs using 168 methods/strategies,
(2) evaluating the normalization performances from multiple perspectives,
and (3) enabling the systematic comparison among all methods/strategies
based on a comprehensive performance ranking.
Usage
1
nortimecoursenoall(fileNameC, impt = NULL, trsf = NULL)
Arguments
fileNameC
Please find the detail information of the file format from those six sample
files in the working directory (in github) “idrblab/METNOR/data”
impt
Input the name of imputation methods.
If set 1, method of column mean imputation.
If set 2, method of column median imputation.
If set 3, method of half of the minimum positive value.
If set 4, method of KNN imputation.
trsf
Input the name of transformation methods.
If set 1, method of cube root transformation.
If set 2, method of log transformation.
If set 3, none transformation method.
Examples
1
allranks_non <- nortimecoursenoall(fileNameC = timec_non_data, impt = "1", trsf = "1")
YingZhang0811/test11 documentation built on Aug. 9, 2020, 12:32 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Examples
View source: R/Timecourse-NONE.R
Description
This function handles (1) normalizing the Time-course metabolomic data without QCSs and ISs using 168 methods/strategies, (2) evaluating the normalization performances from multiple perspectives, and (3) enabling the systematic comparison among all methods/strategies based on a comprehensive performance ranking.
Usage
1 | nortimecoursenoall(fileNameC, impt = NULL, trsf = NULL)
|
Arguments
fileNameC |
Please find the detail information of the file format from those six sample files in the working directory (in github) “idrblab/METNOR/data” |
impt |
Input the name of imputation methods. If set 1, method of column mean imputation. If set 2, method of column median imputation. If set 3, method of half of the minimum positive value. If set 4, method of KNN imputation. |
trsf |
Input the name of transformation methods. If set 1, method of cube root transformation. If set 2, method of log transformation. If set 3, none transformation method. |
Examples
1 | allranks_non <- nortimecoursenoall(fileNameC = timec_non_data, impt = "1", trsf = "1")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.