Man pages for YoannAnciaux/inferenceFitnessLandscape
What the Package Does (One Line, Title Case)
| add_mut_to_pheno | Add phenotypic effects of mutation(s) from 'pheno_mut_effect'... |
| assert_genotype_table | Checkmate wrapper for argument checks. See 'makeAssertion'... |
| check_genotype_table | Test if the matrix is a genotype_table of all the... |
| equalize_row_order | Reorder the rows of a fitness landscape according to... |
| fitness_mutant_genotype | Returns the fitnesses for each genotype in 'genotype_table'... |
| fl_generate_magellan | Calls the fl_generate binary from MAGELLAN using... |
| ftop_fgm_iso | Generates the phenotypic coordinates, in a 'n'-dimension(s)... |
| generate_coselected_mutation | Generates 'nb_mut' co_selected mutations by calling... |
| generate_model | Closure function which returns a function generating 'nb_mut'... |
| generate_random_mutation | Draw 'nb_mut' mutation(s) effect(s) on phenotype of 'n'... |
| generate_selected_mutation | Generates 'nb_rand_mut' mutants and select 'nb_mut' among... |
| magellan | Functions generating the fitness of the mutants' genotypes in... |
| model_fgmcsmut | Function generating the fitness of the mutants' genotypes in... |
| model_fgmcsmut_2env | Function generating the fitness of the mutants' genotypes in... |
| model_fgmrmut | Function generating the fitness of the mutants' genotypes in... |
| model_fgmrmut_2env | Function generating the fitness of the mutants' genotypes in... |
| model_fgmsmut | Function generating the fitness of the mutants' genotypes in... |
| model_fgmsmut_2env | Function generating the fitness of the mutants' genotypes in... |
| pos_new_env | Returns the coordinates of a new optimum in the plane... |
| prob_esc_drift | Computes the probability of escaping drift for a mutation in... |
| ptof_fgm_iso | Generates the fitness corresponding to the phenotypic... |
| random_mutation | Draw 'nb_mut' mutation(s) effect(s) on phenotype of 'n'... |
| restricted_pleiotropy | Creates restricted pleiotropy (as defined in Chevin et... |
| scale_to_wt_fitness | Function generating the fitness of the mutants' genotypes in... |
| simulate_fl | Apply 'simulation_model' to the rows of the matrix... |
