fl_generate_magellan: Calls the fl_generate binary from MAGELLAN using...

In YoannAnciaux/inferenceFitnessLandscape: What the Package Does (One Line, Title Case)

Description

Calls the fl_generate binary from MAGELLAN using system(command), and return a fitness landscape generated by MAGELLAN reordered as genotype_table.

Usage

fl_generate_magellan(nb_mut, genotype_table, command)

Arguments

nb_mut	A natural number. Number of mutations (or loci in MAGELLAN) used to form the different genotypes from genotype_table.
genotype_table	A matrix of 0 and 1. The rows correspond to different genotypes and the columns to the mutations that are considered for these genotypes. A genotype (at a certain row) has a given mutation when there is a 1 in the corresponding column. A row with only zeros correspond to the wild type.
command	A command with the file path to the binary fl_generate and argument accepted by this binary.

Value

A fitness landscape with the nb_mut first columns corresponding to the genotype_table and the nb_mut+1 column corresponding to the fitness of the genotype of each row.

YoannAnciaux/inferenceFitnessLandscape documentation built on Oct. 31, 2019, 1:19 a.m.