API for YosefLab/ImpulseDE2
Differential expression analysis of longitudinal count data sets
| Global functions | |
|---|---|
| $,ImpulseDE2Object-method | Man page |
| ImpulseDE2 | Man page |
| ImpulseDE2Object-class | Man page |
| [[,ImpulseDE2Object,character,missing-method | Man page |
| append_strReport | Man page Source code |
| computeModelFits | Man page Source code |
| computeNormConst | Man page Source code |
| computeSizeFactors | Man page Source code |
| estimateImpulseParam | Man page Source code |
| estimateSigmoidParam | Man page Source code |
| evalImpulse | Man page Source code |
| evalImpulse_comp | Man page |
| evalLogLikImpulse | Man page Source code |
| evalLogLikImpulse_comp | Man page |
| evalLogLikMu | Man page Source code |
| evalLogLikMu_comp | Man page |
| evalLogLikSigmoid | Man page Source code |
| evalLogLikSigmoid_comp | Man page |
| evalSigmoid | Man page Source code |
| evalSigmoid_comp | Man page |
| fitConstImpulse | Man page Source code |
| fitConstImpulseGene | Man page Source code |
| fitConstModel | Man page Source code |
| fitImpulseModel | Man page Source code |
| fitModels | Man page Source code |
| fitSigmoidGene | Man page Source code |
| fitSigmoidModel | Man page Source code |
| fitSigmoidModels | Man page Source code |
| get_accessors | Man page |
| get_boolCaseCtrl | Man page Source code |
| get_dfAnnotationProc | Man page Source code |
| get_lsModelFits | Man page Source code |
| get_matCountDataProc | Man page Source code |
| get_scaNProc | Man page Source code |
| get_scaQThres | Man page Source code |
| get_strReport | Man page Source code |
| get_vecAllIDs | Man page Source code |
| get_vecConfounders | Man page Source code |
| get_vecDispersions | Man page Source code |
| get_vecSizeFactors | Man page Source code |
| list_accession | Man page |
| names,ImpulseDE2Object-method | Man page |
| names.ImpulseDE2Object | Man page |
| plotGenes | Man page Source code |
| plotHeatmap | Man page Source code |
| processData | Man page Source code |
| runDEAnalysis | Man page Source code |
| runDESeq2 | Man page Source code |
| runImpulseDE2 | Man page Source code |
| set_accessors | Man page |
| set_boolCaseCtrl | Man page Source code |
| set_dfAnnotationProc | Man page Source code |
| set_dfImpulseDE2Results | Man page Source code |
| set_lsModelFits | Man page Source code |
| set_matCountDataProc | Man page Source code |
| set_scaNProc | Man page Source code |
| set_scaQThres | Man page Source code |
| set_strReport | Man page Source code |
| set_vecAllIDs | Man page Source code |
| set_vecConfounders | Man page Source code |
| set_vecDEGenes | Man page Source code |
| set_vecDispersions | Man page Source code |
| set_vecSizeFactors | Man page Source code |
| simulateDataSetImpulseDE2 | Man page Source code |
| updateDEAnalysis | Man page Source code |
| wrapper | Man page |
| writeReportToFile | Man page Source code |
