get_taxa_name: get_taxa_name

In YuLab-SMU/ggtree: an R package for visualization of tree and annotation data

get_taxa_name

Description

get taxa name of a selected node (or tree if node=NULL) sorted by their position in plotting

Usage

get_taxa_name(tree_view = NULL, node = NULL)

Arguments

tree_view	tree view (i.e. the ggtree object). If tree_view is NULL, the last ggplot object will be used.
node	internal node number to specify a clade. If NULL, using the whole tree

Details

This function extract an ordered vector of the tips from selected clade or the whole tree based on the ggtree() plot.

Value

ordered taxa name vector

Author(s)

Guangchuang Yu

Examples

tree <- rtree(30)
p <- ggtree(tree)
get_taxa_name(p)

YuLab-SMU/ggtree documentation built on June 5, 2024, 7:55 a.m.