NEWS.md

In YuLab-SMU/shinyTempSignal: Explore Temporal and Other Phylogenetic Signals

shinyTempSignal 0.0.8

• shinyTempSignal_set_theme() to allows changing the default theme (2024-03-05, Tue, #38)
• add CITATION (2024-02-23, Fri)

shinyTempSignal 0.0.7

• keep x and y variables selected by user when entering new node for analysis (2024-02-21, Wed, #37)
• supports more parameters for tree visualization (2024-02-19, Mon)
• allows visualizing regressions for multiple subtrees and allows downloading tree after removing outliers (2024-02-18, Sun, #35)
• add package level manual (2024-02-06, Tue)
• remove dependencies (Cairo, config and ggpubr) that are actually not in used (2024-01-29, Mon)
• import yulab.utils::str_extract() instead of stringr::str_extract() (2024-01-28, Sun)
• correlation analysis after controling for phylogenetic signal
  • PGLS method (2024-02-18, Sun, #35)
  • PIC method (2024-01-24, Wed, #32)

shinyTempSignal 0.0.6

• add vignette (2024-01-20, Sat)
• modify color scheme (2024-01-15, Mon, #30)
• update output summary data frame (2024-01-13, Sat, #29)

shinyTempSignal 0.0.5

• simultaneous update node across different panels (2023-12-12, Tue, #28)
• add a summary table to present intercept, slope and r-squared.
• allows visualizing regression of subtree with temporal or phylogenetic signals.

shinyTempSignal 0.0.4

• doing regression for subsetting tree by using treeio::tree_subset() (2022-12-12, Mon, #21)
• showing the regression parameter with dataFrame format to help uses to find the abnormal tips of subsetting tree.

YuLab-SMU/shinyTempSignal documentation built on March 6, 2024, 3:25 p.m.