data_tree: Tree data.
In YuWang28/acPCoA: Adjustment for Confounding Factors using Principal Coordinate Analysis
Description
NGS whole genome shotgun (WGS) sequencing data of white oak trees.
Usage
1
Format
A list with multiple elements, which are
- DistMat.d2star
the n by n distance matrix. n is the number of samples. d2star distance is applied.
- DistMat.d2shepp
the n by n distance matrix. n is the number of samples. d2shepp distance is applied.
- DistMat.d2
the n by n distance matrix. n is the number of samples. d2 distance is applied.
- DistMat.cvtree
the n by n distance matrix. n is the number of samples. Cvtree distance is applied.
- DistMat.euclidean
the n by n distance matrix. n is the number of samples. Euclidean distance is applied.
- DistMat.manhattan
the n by n distance matrix. n is the number of samples. Manhattan distance is applied.
- ConfounderMat
the n by q confounder matrix
- ContinentalOri
Samples were divided into three geographic categories according to their continental origins, which are NorthAmerica (NA), West Europe (WE), and East Europe and Asia (EEA).
- batch
Samples were divided into four batches according to the NCBI BioProject from which they were downloaded and the analysis platforms they used
YuWang28/acPCoA documentation built on Dec. 18, 2021, 8:20 p.m.
R Package Documentation
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Description
NGS whole genome shotgun (WGS) sequencing data of white oak trees.
Usage
1 |
Format
A list with multiple elements, which are
- DistMat.d2star
the n by n distance matrix. n is the number of samples. d2star distance is applied.
- DistMat.d2shepp
the n by n distance matrix. n is the number of samples. d2shepp distance is applied.
- DistMat.d2
the n by n distance matrix. n is the number of samples. d2 distance is applied.
- DistMat.cvtree
the n by n distance matrix. n is the number of samples. Cvtree distance is applied.
- DistMat.euclidean
the n by n distance matrix. n is the number of samples. Euclidean distance is applied.
- DistMat.manhattan
the n by n distance matrix. n is the number of samples. Manhattan distance is applied.
- ConfounderMat
the n by q confounder matrix
- ContinentalOri
Samples were divided into three geographic categories according to their continental origins, which are NorthAmerica (NA), West Europe (WE), and East Europe and Asia (EEA).
- batch
Samples were divided into four batches according to the NCBI BioProject from which they were downloaded and the analysis platforms they used
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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