R/pig.R

In Yuliaxis/kernInt: Kernel Integration of Microbiome Analysis Methods & Data

#' Pig samples
#'
#' Gut taxonomic abundances (ASV and Genera level) of 153 piglets days 0, 3 and 7 post birth.
#' Some of the piglets suffered enteric disease between day 8 and the day of weaning and were provided with antibiotics.
#'
#' @format A list containing:
#' \describe{
#'   \item{asv}{Taxonomic abundances at the ASV level}
#'   \item{genera}{Taxonomic abundances at the Genera level}
#'   \item{antibiotic}{Yes if piglet got sick, No otherwise}
#'   \item{metadata}{Sampling day, ids of piglets and sows}
#'   \item{taxonomy}{Taxonomy for each of the ASV codes}
#' }
"pig"