PhyloCyc2NCBI: Get NCBI Taxonomy ID From BioCyc species ID

In YulongNiu/BioCycAPI: A package for providing BioCyc databases API in R

Description

BioCyc Database Additional API - Get the NCBI taxonomy ID from a given BioCyc ID

Usage

PhyloCyc2NCBI(speID)

Arguments

speID

The BioCyc species ID, for example "ECOLI" is for "Escherichia coli K-12 substr. MG1655".

Details

NCBI taxonomy ID is used as unique ID accoss cyc and BioCyc databases. This functions is used to get the corresponding NCBI Taxonomy ID from BioCyc. If BioCyc has no official NCBI taxonomy ID, it will return a character with length of 0 (it looks like "").

Value

The corresponding NCBI Taxonomy ID.

Author(s)

Yulong Niu [e-mail]

Examples

## get human, mouse, and Ecoli NCBI taxonomy ID.
PhyloCyc2NCBI('HUMAN')
PhyloCyc2NCBI('MOUSE')
PhyloCyc2NCBI('ECOLI')

YulongNiu/BioCycAPI documentation built on May 10, 2019, 1:12 a.m.