pttrnt: ptt and rnt

In YulongNiu/ProGenome: A package for processing prokaryotic genomes

Description

Extract and write old ptt and rnt

Usage

ExtractPtt(featureTable)

ExtractRnt(featureTable)

write.ptt(ptt, file)

write.rnt(rnt, file)

Arguments

featureTable	A matrix represents the feature table retrieved from the NCBI ftp.
ptt	A matrix indicating the ptt matrix.
file	A character vector indicating the file path.
rnt	A matrix indicating the rnt matrix

Details

ExtractPtt(): Extract ptt from the featureTable.

ExtractRnt(): Extract rnt from the featureTable.

write.ptt(): Write the ptt file.

write.rnt(): Write the rnt file.

Value

ExtractPtt(): Extract ptt from the featureTable.

ExtractRnt(): Extract rnt from the featureTable.

Author(s)

Yulong Niu [e-mail]

Examples

gzPath <- system.file('extdata', 'eco.feature_table.txt.gz', package = 'ProGenome')
ft <- read.gff(gzPath)

ptt <- ExtractPtt(ft)
rnt <- ExtractRnt(ft)

## Not run: 
write.ptt(ptt, 'eco.ptt')
write.rnt(rnt, 'eco.rnt')

## End(Not run)

YulongNiu/ProGenome documentation built on May 10, 2019, 1:13 a.m.