Esitmate tumor CN profile and tumor cellularity.

Global functions | |
---|---|

addChroms | Source code |

average | Source code |

binomP | Source code |

binomPvec | Source code |

calcBaf | Source code |

calcC | Source code |

calcEmiss | Source code |

calcEmissAll | Source code |

calcGC | Source code |

calcLL | Source code |

calcLLsum | Source code |

calcSigAll | Source code |

calcSigAll1 | Source code |

calcSigAllBack | Source code |

calcSigLeft | Source code |

calcSigRight | Source code |

chi | Source code |

collapse | Source code |

combineCounts | Source code |

cumulSig | Source code |

extractChroms | Source code |

filtering | Source code |

getLengths | Source code |

getPValues | Source code |

heatm | Source code |

inferCNA | Source code |

inferStates | Source code |

joinNeighbours | Source code |

loadBamRegions | Source code |

loadFreq | Source code |

logQQ | Source code |

makeInitialCNDist | Source code |

maxll | Source code |

mergeByDist | Source code |

mergeByDistML | Source code |

mergeByDistTest | Source code |

mergeByDistTest2 | Source code |

mergeUsingML | Source code |

multiArmSig | Source code |

normalize | Source code |

objF | Source code |

p2chisq | Source code |

plotBars | Source code |

plotHeatm | Source code |

plotHeatmap | Source code |

plotMAF | Source code |

plotMatrix | Source code Source code |

plotPred | Source code |

probF | Source code |

qb | Source code |

readVCF | Source code |

runForPloidy | Source code |

sampBeta | Source code |

segHMM2 | Source code |

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