plot_richness: Plot the richness of the given list of species on a landscape

In ZHG2017/Rcpp-packageGen3sis: General Engine for Eco-Evolutionary Simulations

Description

Plot the richness of the given list of species on a landscape

Usage

plot_richness(species_list, landscape)

Arguments

species_list	a list of species to use in the richness calculation
landscape	a corresponding landscape object

Examples

## plot from saved outputs
# get path containing example rasters
datapath <- system.file(file.path("extdata", "WorldCenter"), package="gen3sis")
# get species at t0
species_t_0 <- readRDS(file.path(datapath, 
                        "output/config_worldcenter/species/species_t_0.rds"))
# get landscape at t0
landscape_t_0 <- readRDS(file.path(datapath, 
                          "output/config_worldcenter/landscapes/landscape_t_0.rds"))
# plot richness
plot_richness(species_t_0, landscape_t_0)


## plot from within observer
# call plot_richness from inside the end_of_timestep_observer function 
# at the config file:
## Not run: 
plot_richness(data$all_species, data$landscape)

## End(Not run) 

ZHG2017/Rcpp-packageGen3sis documentation built on Dec. 18, 2021, 8:24 p.m.