Alpha_diversity_index: Alpha_diversity_index
In Zachary-Wu/learn: learn something about development of R package
Description
Usage
Arguments
Value
Examples
View source: R/Alpha_diversity_index.R
Description
The source code from the url:
http://blog.sciencenet.cn/blog-3406804-1179983.html
Usage
1
Alpha_diversity_index(x, tree = NULL, base = exp(1))
Arguments
x
Community data matrix
tree
A phylo tree object
base
The logarithmic base of the formula
Value
Calculate Alpha Diversity Index by OTUs:
Richness, Chao1, ACE, Shannon, Simpson, Pielou,
goods_coverage, Pedigree diversity
Examples
1
Alpha_diversity_index(phylocom$sample, tree = phylocom$phylo)
Zachary-Wu/learn documentation built on Aug. 14, 2020, 12:39 a.m.
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Description Usage Arguments Value Examples
View source: R/Alpha_diversity_index.R
Description
The source code from the url: http://blog.sciencenet.cn/blog-3406804-1179983.html
Usage
1 | Alpha_diversity_index(x, tree = NULL, base = exp(1))
|
Arguments
x |
Community data matrix |
tree |
A phylo tree object |
base |
The logarithmic base of the formula |
Value
Calculate Alpha Diversity Index by OTUs: Richness, Chao1, ACE, Shannon, Simpson, Pielou, goods_coverage, Pedigree diversity
Examples
1 | Alpha_diversity_index(phylocom$sample, tree = phylocom$phylo)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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