heat_plot: A swap function of pheatmap

In ZhonghuiGai/gfun: Supporting Functions for Data Analysis by 'ZHGai'

A swap function of pheatmap

Description

A swap function of pheatmap

Usage

heat_plot(
  mat,
  cluster_cols = T,
  cluster_rows = T,
  display_numbers = FALSE,
  color = c("#3c9eff", "gray99", "#ff445d"),
  treeheight_row = 20,
  treeheight_col = 20,
  cellwidth = NA,
  cellheight = NA,
  cutree_rows = 2,
  cutree_cols = 2,
  fontsize = 6,
  fontsize_number = 9,
  fontsize_row = 11,
  fontsize_col = 11,
  angle_col = 45,
  ...
)

Arguments

mat	numeric matrix of the values to be plotted.
cluster_cols	boolean values determining if columns should be clustered or hclust object.
cluster_rows	boolean values determining if rows should be clustered or hclust object,
display_numbers	logical determining if the numeric values are also printed to the cells. If this is a matrix (with same dimensions as original matrix), the contents of the matrix are shown instead of original values.
color	vector of colors used in heatmap.
treeheight_row	treeheight_row
treeheight_col	treeheight_col
cellwidth	cellwidth
cellheight	cellheight
cutree_rows	cutree_rows
cutree_cols	cutree_cols
fontsize	fontsize
fontsize_number	fontsize_number
fontsize_row	fontsize_row
fontsize_col	fontsize_col
angle_col	angle_col
...	other param

Author(s)

Zhonghui Gai

ZhonghuiGai/gfun documentation built on Feb. 10, 2023, 6:10 p.m.