nj.tree: Draw ggtree based phylogenetic tree using DNA or protein...
In ZhonghuiGai/ggtreeEx: Draw ggtree based phylogenetic tree using DNA or protein sequences
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Draw ggtree based phylogenetic tree using DNA or protein sequences
Usage
1
Arguments
file
a file path. The file containg the sequences in fasta format.
align.method
method for multiple sequences alignment, one of "muscle" and "DECIPHER"
html
a boolean value to indicate if to show the alignment result in the explore
plot
a boolean value if draw the tree using ggtree package
Value
a ggtree plot
Author(s)
Zhonghui Gai
Examples
1
nj.tree("prob.16S.fa")
ZhonghuiGai/ggtreeEx documentation built on Dec. 18, 2021, 9:20 p.m.
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Description Usage Arguments Value Author(s) Examples
Description
Draw ggtree based phylogenetic tree using DNA or protein sequences
Usage
1 |
Arguments
file |
a file path. The file containg the sequences in fasta format. |
align.method |
method for multiple sequences alignment, one of "muscle" and "DECIPHER" |
html |
a boolean value to indicate if to show the alignment result in the explore |
plot |
a boolean value if draw the tree using ggtree package |
Value
a ggtree plot
Author(s)
Zhonghui Gai
Examples
1 | nj.tree("prob.16S.fa")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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