ExperimentParam: Experiment Setup
In ZhuMetLab/Sterol4DAnalyzer: Sterol-lipids identifier

View source: R/Function-Params.R

ExperimentParam

R Documentation

Experiment Setup

Description

Parameters for experimental setup

Usage

ExperimentParam(
  wd = ".",
  resDir = "results",
  tmpDir = file.path(resDir, "tmp"),
  polarity = c("positive", "negative"),
  ce = "30",
  lc = c("RP", "HILIC"),
  instrument = c("Sciex6600", "Agilent6560"),
  ms1range = NULL,
  ms2range = NULL,
  resDefineAt = 400,
  nSlaves = 4
)

Arguments

`wd`	`character` Working directory for experiment to be processed
`resDir`	`character` Folder for storing results
`tmpDir`	`character` Folder for storing files when processing. By default, it is the same with `wd`
`polarity`	`character` Ion mode for MS data acquisition
`lc`	`character` LC column used for LC seperation
`instrument`	`character` Instrument used for MS data acquisition
`ms1range`	`numeric(2)` Mass range setup for MS1 acquisition
`ms2range`	`numeric(2)` Mass range setup for MS2 acquisition
`resDefineAt`	`numeric` Mz value for defining resolution
`nSlaves`	`numeric` Number of threads to be used