coappearance.list: order each type of edges decreasingly in edge weights.
In ZijunGao/latentMediator:
coappearance.list R Documentation
order each type of edges decreasingly in edge weights.
Description
order each type of edges decreasingly in edge weights.
Usage
coappearance.list(g, top = 10)
Arguments
g
a weighted graph object from igraph. By default, there are three types of edges: gene-gene, gene-trait, and trait-trait. Genes are recorded as "rsXXX", and traits do not start with "rs".
top
how many edges for display.
Examples
SR0 = readRDS(file = "/Users/zijungao/Dropbox/PathGPS/plot/source code/source data/metabolitesUMAP.rds")
coappearance.list(SR0$graph)
ZijunGao/latentMediator documentation built on April 24, 2022, 12:12 a.m.
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| coappearance.list | R Documentation |
order each type of edges decreasingly in edge weights.
Description
order each type of edges decreasingly in edge weights.
Usage
coappearance.list(g, top = 10)
Arguments
g |
a weighted graph object from igraph. By default, there are three types of edges: gene-gene, gene-trait, and trait-trait. Genes are recorded as "rsXXX", and traits do not start with "rs". |
top |
how many edges for display. |
Examples
SR0 = readRDS(file = "/Users/zijungao/Dropbox/PathGPS/plot/source code/source data/metabolitesUMAP.rds") coappearance.list(SR0$graph)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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