Man pages for Zouter/MPath_gh
Mpath: a single-cell RNAseq data analysis algorithm that maps multi-branching single-cell trajectories revealing cell progression during development
| build_network | build_network constructs weighted neighborhood network |
| color_code_node_2 | color_code_node_2 plot state transition network in which... |
| find_optimal_cluster_number | find_optimal_cluster_number identifies the optimal number of... |
| heatmap_nbor | heatmap_nbor plot heatmap of gene expression |
| landmark_designation | landmark_designation clusters cells and determines landmark... |
| Mpath-package | Mpath: an analysis algorithm that maps multi-branching... |
| nbor_order | nbor_order sorts individual cells according to their various... |
| pseudotimePlotByGenes | pseudotimeplotByGenes |
| QC_gene | QC_gene removes genes that have TPM values < 1 in more than... |
| SC_anova | SC_anova run ANOVA test to identify differentially expressed... |
| SC_hc | SC_hc hierachical clustering of single cells |
| SC_hc_colorCode | SC_hc_colorCode hierarchical clustering of single cells,... |
| trim_net | trim_net trimms the weighted neighborhood network by removing... |
| vgam_deg | vgam_deg identifies genes that were differentially expressed... |
| vgam_perGene | vgam_perGene determines if a gene is differentially expressed... |
