vgam_perGene: vgam_perGene determines if a gene is differentially expressed...

In Zouter/MPath_gh: Mpath: a single-cell RNAseq data analysis algorithm that maps multi-branching single-cell trajectories revealing cell progression during development

Description

vgam_perGene determines if a gene is differentially expressed along the re-ordered single-cell trajectories using vgam

Usage

vgam_perGene(expr, order, min_expr)

Arguments

expr	a vector of one gene's expression in different cells (ie. rpkm, TPM, fpkm)
order	a vector of re-ordered cell IDs
min_expr	a numeric value indicating the minimum TPM value for a gene to be considered as expressed. Default is 1.

Value

pval: p value of significance of the gene being differentially expressed

Examples

## Not run: 
p_val <- vgam_perGene(expr,order,min_expr=1)

## End(Not run)

Zouter/MPath_gh documentation built on May 14, 2019, 8:58 a.m.