estimateRedundancy | Estimates the redundancy of enriched gene sets |
generateBackgroundModel | Generate background models |
getTransformationMatrix | Barycentric transformation matrix |
interactiveDotplot | Interactive triwise dotplot |
interactivePvalplot | Interactive plot of p-values |
plotDotplot | Creating a dotplot |
plotPvalplot | Plot results from unidirectional enrichment |
plotRoseplot | Plot the directional distribution of genes |
testEnrichment | Simple fisher's exact test for enrichment in a given set of... |
testLocality | Test local upregulation |
testRayleigh | Rayleigh z-test implementation |
testUnidirectionality | Test gene sets for unidirectional enrichment |
transformBarycentric | Conversion to barycentric coordinates |
transformReverseBarycentric | Convert from barycentric coordinates back to original... |
vandelaar | Expression dataset from van de Laar et al. 2016 |
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