Man pages for a-henderson91/vectorbornefit
MCMC fit SEIR model of vetor borne transmission
| AdaptMCMCloop_withDENVimmunity | MCMC function for fitting Zika model using MH algorithm |
| AdaptMCMCloop_withDENVimmunityPartial | MCMC function for fitting Zika model using MH algorithm |
| calculate_r0 | calculate_r0 |
| calculate_r0_adam | calculate_r0 |
| ComputePrior | Compute prior |
| control_f | Flexible decline function transmission rate function |
| DENV_mcmc | R Code for SEIR DENV epidemic in a single population |
| DEPRECATED_simulate_deterministic_noage_DENVimm | ODEs for SEIR-SEI with cross immunity from denv infection |
| Deterministic_modelR_final_DENVimmmunity | Deterministic SEIR-SEI function with no age structure |
| Deterministic_modelR_final_DENVimmmunityPartial | Deterministic SEIR-SEI function with no age structure |
| Deterministic_modelR_mosqpop | Deterministic SEIR-SEI function with no age structure |
| extinct | Reporting cases function |
| intro_f | Flexible decline function transmission rate function |
| likelihood_fn | WeatherFit likelihood fn |
| load.data.multistart | Load data for model fitting |
| load.posteriors | load.posteriors |
| MCMCloop_withDENVimmunity | MCMC function for fitting Zika model using MH algorithm |
| NOLIKELIHOOD_AdaptMCMCloop_withDENVimmunity | MCMC function for fitting Zika model using MH algorithm |
| ReportC | Reporting cases function |
| results_set_up | Setup results vectors and dataframes and load initial values.... |
| results_set_upPartial | Setup results vectors and dataframes and load initial values.... |
| Run_simulation | Simulate function for SIR |
| SampleTheta | Sample the vector of parameters from a multivariate normal... |
| SampleThetaPartial | Sample the vector of parameters from a multivariate normal... |
| seasonal_f | Seasonal transmission rate function |
| simulate_deterministic_noage_DENVimm | ODEs for SEIR-SEI with cross immunity from denv infection |
| theme_zika_fiji | Background theme for ggplots for Zika paper |
| weather.fit | WeatherFit |
