dot-make.sbml: Create an SBML model from Tables
In a-kramer/SBtabVFGEN: Converts from SBtab to vf,mod,[sbml]

.make.sbml

R Documentation

Create an SBML model from Tables

Description

This function creates a character vector that contains the biological model in SBML form. The return value can be written into a file to create an SBML document.

Usage

.make.sbml(
  H,
  Defaults,
  Constant = NULL,
  Parameter,
  Input = NULL,
  Expression = NULL,
  Reaction,
  Compound,
  Output,
  Comp
)

Arguments

`H`	model header, a Model identifying string
`Defaults`	A data.frame with default units
`Constant`	Table of Constants for this model [optional]
`Parameter`	Table of Parameters
`Input`	Table of input parameters, treated the same as normal Parameters
`Expression`	will be interpreted and transformed into somthing that SBML understands (optional)
`Reaction`	Table of reactions
`Compound`	Table of species (reacting compounds)
`Output`	Table of output functions (a model of measurement/observables)
`Comp`	Table of Compartments