plot_net: Plot a network

In aaamini/nett: Network Analysis and Community Detection

Plot a network

Description

Plot a network using degree-modulated node sizes, community colors and other enhancements

Usage

plot_net(
  gr,
  community = NULL,
  color_map = NULL,
  extract_lcc = TRUE,
  heavy_edge_deg_perc = 0.97,
  coord = NULL,
  vsize_func = function(deg) log(deg + 3) * 1,
  vertex_border = FALSE,
  niter = 1000,
  vertex_alpha = 0.4,
  remove_loops = TRUE,
  make_simple = FALSE,
  ...
)

Arguments

gr	the network as an igraph object
community	community assignment; vector of node labels
color_map	color palette for clusters in 'gr'
extract_lcc	Extract largest connected component or not
heavy_edge_deg_perc	Degree percentile threshold for determining heavy edges
coord	Optional starting positions for the vertices. If this argument is not NULL then it should be an appropriate matrix of starting coordinates.
vsize_func	function to determine the size of node size
vertex_border	whether to show the border of vertex or not
niter	number of iteration for FR layout computation
vertex_alpha	factor modifying the opacity alpha of vertex; typically in [0,1]
remove_loops	whether to remove loops in the network
make_simple	whether to simplify edge weight calculation
...	other settings

Value

A network plot

aaamini/nett documentation built on Nov. 12, 2022, 6:25 p.m.