find_cp_cusum: Identify changepoint using CUSUM method, and find expected...

In aarmiller/delaySim: Package to run delayed diagnosis simulations

Identify changepoint using CUSUM method, and find expected SSD visits/calculate misses by fitting a linear model before the changepoint

Description

Identify changepoint using CUSUM method, and find expected SSD visits/calculate misses by fitting a linear model before the changepoint

Usage

find_cp_cusum(
  data,
  var_name = "n_miss_visits",
  return_miss_only = FALSE,
  week_period = FALSE,
  specify_cp = NULL,
  auto_reg = FALSE
)

Arguments

data	A dataframe output by prep_cp_data
var_name	A character string of outcome for which to apply analysis
return_miss_only	Logical to only return miss information
week_period	Logical to incorporate a "day of the week" effect into the linear model. Note this is only sensible for one-day period aggregation.
specify_cp	Set a specific change point you want to use instead of searching for optimal change point. Enter a postive integer value repersenting the days before the index on which you you want to specify the change point. (e.g. 100 would be 100 days before the index)
auto_reg	Logical that determines whether expected counts use a time-series framework that incorporates autoregression. If week_period is FALSE, will use a 7-day seasonality component. If week_period is TRUE, will use an additive indicator

Value

A list containing miss information, changepoint information, predictions, the model itself, and a plot of the middle finger curve and model.

Examples

cp_result_cusum <- final_time_map %>%
filter(days_since_dx >= -180) %>%
prep_cp_data(event_name = "any_ssd", start_day = 1, by_days = 1) %>%
find_cp_cusum(var_name = "n_miss_visits", return_miss_only = FALSE, week_period=TRUE)

aarmiller/delaySim documentation built on Jan. 2, 2023, 11:23 p.m.