genenetwork-data: Retrieve Data from GeneNetwork

In aaronwolen/gnr: GeneNetwork R API Client

Description

Retrieve Data from GeneNetwork

Usage

gn_species()

gn_groups(species = NULL)

gn_datasets(group)

gn_genotypes(group)

Arguments

species	A valid species name (e.g., "mouse"). Use gn_species() to retrieve a list of species supported by GeneNetwork.
group	A group name. Use gn_groups() to retrieve a list of valid group names.

Functions

• gn_species: Table of supported species (e.g., "mouse")

• gn_groups: Table of available groups of subjects or samples (e.g., "bxd").

• gn_datasets: Table of available datasets for a particular group.

• gn_genotypes: Retrieve genotypes data for a specific group.

Examples

species <- gn_species()
groups <- gn_groups()

# retrieve all bxd datasets
datasets <- gn_datasets(group = "bxd")

# retrieve bxd genotypes
genos <- gn_genotypes(group = "bxd")

aaronwolen/gnr documentation built on May 30, 2019, 12:01 a.m.