Detecting hidden batch factors through data adaptive adjustment for biological effects

adj2vector | Transform the adjacency matrix to a vector |

DASC | Detecting hidden batch factors through data adaptive... |

get_father | Representing node in this subtype |

Ini_SemiNMF | Initialization of the semi-NMF |

Loss_Fro | Get the error of Semi-NMF using frobenius norm |

merge | Combine two trees into one |

Semi_NMF | Main function of semi-NMF |

Sptree | Get Spanning tree from adjacency matrix |

stanfordData | Stanford RNA-Seq dataset |

trans_ADJ | Outputs Adjacency matrix from the factor vector |

trans_Laplace | Get Laplace matrix from factor vector |

update_G | Update G in Semi-NMF |

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